Difference: WmsxReference (2 vs. 3)

-v

Specifies that you want debug output on the console. Leave this out once you feel comfortable.

myworkdir

Location of the working directory. This is where all the logging and output goes. You may want to set this to a location inside your home directory.

-rememberafs

Will ask for your AFS password and renew AFS tokens until provider is running.

-remembergrid

Will ask for your Grid password and renew the Grid tokens until there are no more managed jobs.

Traditional submission of single jobs with traditional JDL files

-o

File to store StdOut / StdError. If the JDL file has JobType set to "Interactive", then StdOut / StdError will be retrieved while the Job is running and stored in the given filename.

-r

When the job is done, results are retrieved and stored in the given directory.

Automated mass submission of jobs via ArgList files

-a args.file

Submit many jobs with the ArgList file, named args.file.

-name runname

Give the name runname to this execution run (optional). It is used as a subdirectory under the working directory of the provider to distinguish between different ArgList submissions.

-n nmaxjobs

Set the maximal number of concurrently running jobs to nmaxjobs (optional).

The word COMMAND refers to a WMSX JDL file (not a traditional JDL file), named COMMAND.jdl, which describes your job. If the COMMAND.jdl is not present, default job specifications are assumed, which shall be discussed in the followings.

Archive

Name of the program archive file. This is the name of the tarball, containing your program. If not specified, defaults to "COMMAND.tar.gz". (Must be of tar-gz format!)

ProgramDir

Name of the root directory inside the program archive file. The files and directories of your program archive are assumed to be under this directory, and their paths are assumed to be given relative to this directory. Setting this to "." means that the content of your tarball is not wrapped in a directory. If not specified, defaults to "COMMAND".

Executable

Name of the executable to run inside the ProgramDir. If not specified, defaults to "COMMAND".

OutputDirectory

The name of the directory under ProgramDir, where the output of your program is written. This is the directory, which is going to be retrieved by the framework as output. If not specified, defaults to "out".

JobType

If this variable is set to "Interactive", the jobs will be run as interactively in the sense that the StdOut / StdError is retrieved on-the-fly, so you are able to see what your job is currently doing. If not set, the job is not interactive by default.

Software

List of software that must be present (executable) on the target machine. The special key "AFS" requires and checks AFS presence. E.g.: Software = {"AFS", "g++"};. If not set, defaults to empty.

Requirements

Extra queue requirements, like in a traditional JDL file. If not set, defaults to empty.

If the JDL file is not present, the above default values are assumed (i.e. the tarball has to have the name COMMAND.tar.gz etc.).

In the followings, things are more easily explained if the notion of AbsCOMMAND is introduced: this is simply the full path to the file COMMAND.jdl file (or if not present, to the the COMMAND.tar.gz file), without the ".jdl" extension (or without the ".tar.gz" extension).

Pre-execution and post-execution scripts

In most times it is useful to have pre-execution and post-execution scripts. These may be used for e.g. preparing the input data files, or archiving output data files etc. If present, these have to be called COMMAND_preexec and COMMAND_postexec. They must be executable. They will be run directly before submission and after job output is retrieved, respectively.

COMMAND_preexec, if present, is automatically called by the framework with the AbsCOMMAND as first argument, and with all the given arguments from ArgList as following arguments.

COMMAND_postexec, if present, is automatically called by the framework with the AbsCOMMAND as first argument, the name of the job output directory as second argument (automatically generated by the framework), and with all the given arguments from ArgList as following arguments.

The retrieved outputs of your job will always be in the tarball out.tar.gz under the job output directory.

If COMMAND_postexec returns with 0 nothing further happens. If returns with 1, the script COMMAND_chain is called, if present, which can be used to launch further jobs.

Job chaining

The running time of Grid jobs is limited. This is unavoidable for efficient controling of resources. The time limit depends on the given queue, but a typical value is three days. However, one often faces such computing problems, when the total running time of the jobs cannot be estimated a priori, or it is estimated to be very long. For such cases, the job chaining is the solution: the program has to be split up into shorter subsequent pieces with limited running time. The program has to be written in such a way, that its running time is limited internally (e.g. to one day), and when this time limit is exceeded, its last state is dumped as output. The next copy of the program has to be started with this last state as input, thus, by such chain of limited lifetime jobs, one can imitate arbitrary long lifetime jobs. The script COMMAND_chain is the tool to lauch further jobs, when needed.

If the COMMAND_postexec script returns 1, the script COMMAND_chain is invoked (must be executable). In this case, if present, it is automatically called by the framework with the AbsCOMMAND as first argument, the name of the job output directory as second argument, and with all the given arguments from ArgList as following arguments.

The output of COMMAND_chain is interpreted by the framework as ArgList lines, just as if they were lines from the initial ArgList file. Therefore, it can be used to lauch further jobs by a finished job, depending on the decision of the COMMAND_postexec script. This is called the job chaining. (The COMMAND_chain may have multiple lines as output. Each line is interpreted like a line from the ArgList file, so multiple jobs may also be lauched: the job chain may also fork.)